Package: rwty
Type: Package
Title: R We There Yet? Visualizing MCMC Convergence in Phylogenetics
Version: 1.0.3
Authors@R: c(person(given = "Dan", family = "Warren", role = c("aut", "cre"), email = "dan.l.warren@gmail.com"),
              person(given = "Anthony", family = "Geneva", role = "aut", email = "anthony.geneva@gmail.com"),
              person(given = "Rob", family = "Lanfear", role = "aut", email = "rob.lanfear@gmail.com"),
              person(given = "Luke", family = "Harmon", role = "ctb"),
              person(given = "April", family = "Wright", role = "ctb"),
              person(given = "Diego", family = "Mallo", role = "ctb"),
              person(given = "Klaus", family = "Schliep", role = "ctb"),
              person(given = "Kelly", family = "Luke", role = "ctb"),
              person(given = "Kendall", family = "Michelle", role = "ctb"),
              person(given = "Smith", family = "Martin", role = "ctb")
              )
Description: Implements various tests, visualizations, and metrics
    for diagnosing convergence of MCMC chains in phylogenetics.  It implements
    and automates many of the functions of the AWTY package in the R
    environment, as well as a host of other functions.  Warren, Geneva, and Lanfear (2017), <doi:10.1093/molbev/msw279>.
License: GPL-2
Depends: R (>= 3.3.0), ape, ggplot2,
Imports: reshape2, phangorn, coda, viridis, grid, plyr, ggdendro,
        GGally, parallel, TreeDist
Suggests: knitr, testthat, markdown, rmarkdown, stringi
Encoding: UTF-8
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2025-03-27 03:12:07 UTC; danwarren
Author: Dan Warren [aut, cre],
  Anthony Geneva [aut],
  Rob Lanfear [aut],
  Luke Harmon [ctb],
  April Wright [ctb],
  Diego Mallo [ctb],
  Klaus Schliep [ctb],
  Kelly Luke [ctb],
  Kendall Michelle [ctb],
  Smith Martin [ctb]
Maintainer: Dan Warren <dan.l.warren@gmail.com>
Repository: CRAN
Date/Publication: 2025-03-27 11:50:02 UTC
Built: R 4.7.0; ; 2026-06-08 04:06:35 UTC; windows
