Package: dartR.popgen
Type: Package
Title: Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide
        Restriction Fragment Analysis
Version: 1.2.2
Date: 2026-02-17
Revision: Elastic Elapid
Authors@R: c(
            person("Bernd", "Gruber", email="bernd.gruber@canberra.edu.au", role=c("aut","cre")), 
            person("Arthur", "Georges", email="georges@aerg.edu.au", role="aut"),
            person("Jose L.", "Mijangos", email="Luis.MijangosAraujo@canberra.edu.au", role="aut"), 
            person("Carlo", "Pacioni",email="carlo.pacioni@delwp.vic.gov.au",role="aut"),
            person("Diana", "Robledo-Ruiz", email="diana.robledoruiz1@monash.edu", role = "aut"),
            person("Peter J.", "Unmack", email="peter.mail2@unmack.net", role="ctb"),
            person("Oliver", "Berry", email="oliver.berry@csiro.au", role="ctb" ),
            person("Lindsay V.", "Clark", email="lvclark@illinois.edu", role="ctb"),
            person("Floriaan", "Devloo-Delva",email="Floriaan.Devloo-Delva@csiro.au", role="ctb"),
            person("Eric","Archer", email="eric.archer@noaa.gov", role="ctb"),
            person("Ching Ching","Lau", email="chingching01415@gmail.com", role="ctb")
            )
Description: Facilitates the analysis of SNP (single nucleotide polymorphism) 
    and silicodart (presence/absence) data. 'dartR.popgen' provides a suit of 
    functions to analyse such data in a population genetics context. It provides
    several functions to calculate population genetic metrics and to study 
    population structure. Quite a few functions need additional software to be 
    able to run (gl.run.structure(), gl.blast(), gl.LDNe()). You find detailed description 
    in the help pages how to download and link the packages so the function can 
    run the software. 'dartR.popgen' is part of the the 'dartRverse' suit of packages.
    Gruber et al. (2018) <doi:10.1111/1755-0998.12745>.
    Mijangos et al. (2022) <doi:10.1111/2041-210X.13918>.
Encoding: UTF-8
Depends: R (>= 4.1), dartR.base, dartR.data
Imports: methods, adegenet (>= 2.0.0), utils, MASS, dplyr, patchwork,
        crayon, ggplot2, data.table, stringr, furrr, future, ggdendro,
        LEA, pillar, plyr, terra, purrr, ggpmisc, R.utils, ape
Suggests: SIBER, expm, fields, gplots, gridExtra, igraph, iterpc,
        label.switching, leaflet, proxy, qvalue, raster, reshape2,
        scales, snpStats, tidyr, viridis, zoo, gsubfn, sp
License: GPL (>= 3)
RoxygenNote: 7.3.3
NeedsCompilation: no
Packaged: 2026-03-16 06:14:42 UTC; s425824
Author: Bernd Gruber [aut, cre],
  Arthur Georges [aut],
  Jose L. Mijangos [aut],
  Carlo Pacioni [aut],
  Diana Robledo-Ruiz [aut],
  Peter J. Unmack [ctb],
  Oliver Berry [ctb],
  Lindsay V. Clark [ctb],
  Floriaan Devloo-Delva [ctb],
  Eric Archer [ctb],
  Ching Ching Lau [ctb]
URL: https://green-striped-gecko.github.io/dartR/
BugReports: https://groups.google.com/g/dartr?pli=1
Maintainer: Bernd Gruber <bernd.gruber@canberra.edu.au>
Repository: CRAN
Date/Publication: 2026-03-16 07:00:02 UTC
Built: R 4.7.0; ; 2026-06-08 03:51:25 UTC; windows
