AICc                    Corrected Akaike information criterion and
                        number of observations
Skabbholmen             Skabbholmen island data
VP.gllvm                Calculate variance partitioning
anova.gllvm             Analysis Of Deviance for gllvm
beetle                  ground beetle assemblages
coefplot.gllvm          Plot covariate coefficients and confidence
                        intervals
confint.gllvm           Confidence intervals for model parameters
eSpider                 Hunting spider data
ecoCoefs                Functions to extract ecological quantities of
                        the latent variables from a GLLVM, if species
                        are a quadratic function of the latent
                        variables.
fungi                   Wood-decaying fungi data
getEnvironCov.gllvm     Extract species covariances due to
                        environmental random effects from gllvm object
getLV.gllvm             Extract latent variables
getLoadings.gllvm       Extract loadings
getPredictErr.gllvm     Extract prediction errors for latent variables
                        from gllvm object
getResidualCor.gllvm    Extract residual correlations from gllvm object
getResidualCov.gllvm    Extract residual covariance matrix from gllvm
                        object
gllvm                   Generalized Linear Latent Variable Models
glmmVA                  Fitting Generalized Linear Mixed-Effects Models
                        with Variational Approximation
goodnessOfFit           Goodness of fit measures for a gllvm
kelpforest              Kelp Forest community Dynamics: Cover of
                        sessile organisms, Uniform Point Contact
logLik.gllvm            Log-likelihood of gllvm
microbialdata           Microbial community data
ordiplot.gllvm          Plot latent variables from gllvm model
phyloplot.gllvm         Plot phylogenetic random effects from gllvm
plot.gllvm              Plot Diagnostics for an gllvm Object
predict.gllvm           Predict Method for gllvm Fits
predictLVs.gllvm        Predict latent variables for gllvm Fits
predictPairwise.gllvm   Predict co-occurrence from a gllvm object
predictSR.gllvm         Predict species richness from a gllvm object
randomCoefplot.gllvm    Plot random slope coefficients
residuals.gllvm         Dunn-Smyth residuals for gllvm model
residuals.predictSR.gllvm
                        Dunn-Smyth residuals for species richness from
                        a gllvm object
se.gllvm                Standard errors for gllvm model
simulate.gllvm          Simulate data from gllvm fit
summary.gllvm           Summarizing gllvm model fits
update.gllvm            Update and Re-fit a gllvm Model Call
vcov.gllvm              Returns variance-covariance matrix of
                        coefficients in a GLLVM.
