# Generated by roxygen2: do not edit by hand

S3method(AICc,gllvm)
S3method(VP,gllvm)
S3method(anova,gllvm)
S3method(coef,gllvm)
S3method(coefplot,gllvm)
S3method(confint,gllvm)
S3method(getEnvironCor,gllvm)
S3method(getEnvironCov,gllvm)
S3method(getLV,gllvm)
S3method(getLoadings,gllvm)
S3method(getPredictErr,gllvm)
S3method(getResidualCor,gllvm)
S3method(getResidualCov,gllvm)
S3method(logLik,gllvm)
S3method(nobs,gllvm)
S3method(optima,gllvm)
S3method(ordiplot,gllvm)
S3method(phyloplot,gllvm)
S3method(plot,VP.gllvm)
S3method(plot,gllvm)
S3method(plot,predictSR.gllvm)
S3method(plot,summary.gllvm)
S3method(predict,gllvm)
S3method(predictLVs,gllvm)
S3method(predictPairwise,gllvm)
S3method(predictSR,gllvm)
S3method(print,VP.gllvm)
S3method(print,gllvm)
S3method(print,summary.gllvm)
S3method(randomCoefplot,gllvm)
S3method(residuals,gllvm)
S3method(residuals,predictSR.gllvm)
S3method(se,gllvm)
S3method(simulate,gllvm)
S3method(summary,gllvm)
S3method(tolerances,gllvm)
S3method(update,gllvm)
S3method(vcov,gllvm)
export(AICc)
export(AICc.gllvm)
export(VP)
export(coefplot)
export(coefplot.gllvm)
export(confint.gllvm)
export(getEnvironCor)
export(getEnvironCor.gllvm)
export(getEnvironCov)
export(getEnvironCov.gllvm)
export(getLV)
export(getLV.gllvm)
export(getLoadings)
export(getLoadings.gllvm)
export(getPredictErr)
export(getPredictErr.gllvm)
export(getResidualCor)
export(getResidualCor.gllvm)
export(getResidualCov)
export(getResidualCov.gllvm)
export(gllvm)
export(glmmVA)
export(goodnessOfFit)
export(logLik.gllvm)
export(nobs.gllvm)
export(optima)
export(optima.gllvm)
export(ordiplot)
export(ordiplot.gllvm)
export(phyloplot)
export(phyloplot.gllvm)
export(plotVP)
export(plotVarPartitioning)
export(predict.gllvm)
export(predictLVs)
export(predictLVs.gllvm)
export(predictPairwise)
export(predictPairwise.gllvm)
export(predictSR)
export(predictSR.gllvm)
export(print.VP.gllvm)
export(print.summary.gllvm)
export(randomCoefplot)
export(randomCoefplot.gllvm)
export(residuals.predictSR.gllvm)
export(se)
export(se.gllvm)
export(simulate)
export(simulate.gllvm)
export(tolerances)
export(tolerances.gllvm)
export(update.gllvm)
export(varPartitioning)
export(varPartitioning.gllvm)
export(vcov.gllvm)
importFrom(MASS,ginv)
importFrom(MASS,mvrnorm)
importFrom(MASS,polr)
importFrom(Matrix,bdiag)
importFrom(Matrix,chol2inv)
importFrom(Matrix,diag)
importFrom(Matrix,isSymmetric)
importFrom(Matrix,t)
importFrom(TMB,MakeADFun)
importFrom(alabama,auglag)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.size)
importFrom(grDevices,hcl)
importFrom(grDevices,rainbow)
importFrom(graphics,abline)
importFrom(graphics,arrows)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,boxplot)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,panel.smooth)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(methods,as)
importFrom(methods,cbind2)
importFrom(methods,is)
importFrom(methods,rbind2)
importFrom(mgcv,gam)
importFrom(mgcv,predict.gam)
importFrom(nloptr,nloptr)
importFrom(stats,AIC)
importFrom(stats,BIC)
importFrom(stats,aggregate)
importFrom(stats,as.formula)
importFrom(stats,binomial)
importFrom(stats,coef)
importFrom(stats,confint)
importFrom(stats,constrOptim)
importFrom(stats,contrasts)
importFrom(stats,cor)
importFrom(stats,cov)
importFrom(stats,cov2cor)
importFrom(stats,dbinom)
importFrom(stats,dnorm)
importFrom(stats,factanal)
importFrom(stats,formula)
importFrom(stats,gaussian)
importFrom(stats,getCall)
importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,logLik)
importFrom(stats,model.extract)
importFrom(stats,model.frame)
importFrom(stats,model.matrix)
importFrom(stats,model.offset)
importFrom(stats,model.response)
importFrom(stats,na.omit)
importFrom(stats,nlminb)
importFrom(stats,nobs)
importFrom(stats,optim)
importFrom(stats,optimHess)
importFrom(stats,pbeta)
importFrom(stats,pbinom)
importFrom(stats,pchisq)
importFrom(stats,pexp)
importFrom(stats,pgamma)
importFrom(stats,plogis)
importFrom(stats,pnbinom)
importFrom(stats,pnorm)
importFrom(stats,ppoints)
importFrom(stats,ppois)
importFrom(stats,predict)
importFrom(stats,princomp)
importFrom(stats,printCoefmat)
importFrom(stats,qchisq)
importFrom(stats,qnorm)
importFrom(stats,qqline)
importFrom(stats,qqnorm)
importFrom(stats,quantile)
importFrom(stats,rbeta)
importFrom(stats,rbinom)
importFrom(stats,reformulate)
importFrom(stats,reshape)
importFrom(stats,residuals)
importFrom(stats,residuals.lm)
importFrom(stats,rexp)
importFrom(stats,rgamma)
importFrom(stats,rnbinom)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,terms)
importFrom(stats,update)
importFrom(stats,update.formula)
importFrom(stats,vcov)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,relist)
importFrom(utils,tail)
useDynLib(gllvm, .registration = TRUE)
