Package: phylepic
Title: Combined Visualisation of Phylogenetic and Epidemiological Data
Version: 0.3.0
Authors@R: 
    c(person(given = "Carl",
             family = "Suster",
             email = "carl.suster@sydney.edu.au",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0001-7021-9380")),
      person("Western Sydney Local Health District, NSW Health",
             role = "cph",
             comment = "2024-2025"))
Description: A collection of utilities and 'ggplot2' extensions to assist with
  visualisations in genomic epidemiology. This includes the 'phylepic' chart,
  a visual combination of a phylogenetic tree and a matched epidemic curve.
  The included 'ggplot2' extensions such as date axes binned by week are
  relevant for other applications in epidemiology and beyond. The approach is
  described in Suster et al. (2024) <doi:10.1101/2024.04.02.24305229>.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.2
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Imports: ape, cli, cowplot, dplyr, forcats, ggnewscale, ggplot2 (>=
        4.0.0), ggraph, igraph, lifecycle, rlang, scales, tidygraph
URL: https://github.com/cidm-ph/phylepic,
        https://cidm-ph.github.io/phylepic/
BugReports: https://github.com/cidm-ph/phylepic/issues
Config/testthat/edition: 3
Depends: R (>= 4.1)
NeedsCompilation: no
Packaged: 2025-09-12 05:03:52 UTC; csus5157
Author: Carl Suster [aut, cre] (ORCID: <https://orcid.org/0000-0001-7021-9380>),
  Western Sydney Local Health District, NSW Health [cph] (2024-2025)
Maintainer: Carl Suster <carl.suster@sydney.edu.au>
Repository: CRAN
Date/Publication: 2025-09-12 07:20:08 UTC
Built: R 4.4.3; ; 2026-03-27 22:32:03 UTC; windows
